Class ArchaeopteryxE

  • All Implemented Interfaces:
    java.awt.event.ActionListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.RootPaneContainer

    public class ArchaeopteryxE
    extends javax.swing.JApplet
    implements java.awt.event.ActionListener
    See Also:
    Serialized Form
    • Nested Class Summary

      • Nested classes/interfaces inherited from class javax.swing.JApplet

        javax.swing.JApplet.AccessibleJApplet
      • Nested classes/interfaces inherited from class java.applet.Applet

        java.applet.Applet.AccessibleApplet
      • Nested classes/interfaces inherited from class java.awt.Panel

        java.awt.Panel.AccessibleAWTPanel
      • Nested classes/interfaces inherited from class java.awt.Container

        java.awt.Container.AccessibleAWTContainer
      • Nested classes/interfaces inherited from class java.awt.Component

        java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy
    • Field Summary

      • Fields inherited from class javax.swing.JApplet

        accessibleContext, rootPane, rootPaneCheckingEnabled
      • Fields inherited from class java.awt.Component

        BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT
      • Fields inherited from interface java.awt.image.ImageObserver

        ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH
    • Constructor Summary

      Constructors 
      Constructor Description
      ArchaeopteryxE()  
    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      void actionPerformed​(java.awt.event.ActionEvent e)  
      void destroy()  
      java.lang.String getCurrentExternalNodesDataBuffer()
      This method returns the current external node data which has been selected by the user by clicking the "Return ..." menu item.
      int getCurrentExternalNodesDataBufferChangeCounter()  
      int getCurrentExternalNodesDataBufferLength()  
      java.lang.String getCurrentPhylogeny​(java.lang.String format)
      This method returns the current phylogeny as a string in the chosen format
      java.lang.String getCurrentPhylogenyGraphicsAsBase64EncodedString​(java.lang.String format)
      This method returns a view of the current phylogeny in a chosen graphics format, base64-encoded in a string so that in can be used from javascript.
      Options getOptions()  
      void init()  
      void showTextFrame​(java.lang.String s, java.lang.String title)  
      void start()  
      • Methods inherited from class javax.swing.JApplet

        addImpl, createRootPane, getAccessibleContext, getContentPane, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isRootPaneCheckingEnabled, paramString, remove, repaint, setContentPane, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update
      • Methods inherited from class java.applet.Applet

        getAppletContext, getAppletInfo, getAudioClip, getAudioClip, getCodeBase, getDocumentBase, getImage, getImage, getLocale, getParameter, getParameterInfo, isActive, isValidateRoot, newAudioClip, play, play, resize, resize, setStub, showStatus, stop
      • Methods inherited from class java.awt.Panel

        addNotify
      • Methods inherited from class java.awt.Container

        add, add, add, add, add, addContainerListener, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getInsets, getLayout, getListeners, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paint, paintComponents, preferredSize, print, printComponents, processContainerEvent, processEvent, remove, removeAll, removeContainerListener, removeNotify, setComponentZOrder, setFocusCycleRoot, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree
      • Methods inherited from class java.awt.Component

        action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getToolkit, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isOpaque, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, requestFocusInWindow, reshape, revalidate, setBackground, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setLocation, setLocation, setMaximumSize, setMinimumSize, setMixingCutoutShape, setName, setPreferredSize, setSize, setSize, setVisible, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
    • Constructor Detail

      • ArchaeopteryxE

        public ArchaeopteryxE()
    • Method Detail

      • actionPerformed

        public void actionPerformed​(java.awt.event.ActionEvent e)
        Specified by:
        actionPerformed in interface java.awt.event.ActionListener
      • destroy

        public void destroy()
        Overrides:
        destroy in class java.applet.Applet
      • getCurrentExternalNodesDataBuffer

        public java.lang.String getCurrentExternalNodesDataBuffer()
        This method returns the current external node data which has been selected by the user by clicking the "Return ..." menu item. This method is expected to be called from Javascript or something like it.
        Returns:
        current external node data as String
      • getCurrentExternalNodesDataBufferChangeCounter

        public int getCurrentExternalNodesDataBufferChangeCounter()
      • getCurrentExternalNodesDataBufferLength

        public int getCurrentExternalNodesDataBufferLength()
      • getCurrentPhylogeny

        public java.lang.String getCurrentPhylogeny​(java.lang.String format)
        This method returns the current phylogeny as a string in the chosen format
        Parameters:
        format - must be NH, NHX, NEXUS or PHYLOXML
        Returns:
        the phylogeny string
      • getCurrentPhylogenyGraphicsAsBase64EncodedString

        public java.lang.String getCurrentPhylogenyGraphicsAsBase64EncodedString​(java.lang.String format)
        This method returns a view of the current phylogeny in a chosen graphics format, base64-encoded in a string so that in can be used from javascript.
        Parameters:
        format - must be GraphicsExportType (gif, jpg, pdf, png, tif, bmp)
        Returns:
        the phylogeny string
      • getOptions

        public Options getOptions()
      • init

        public void init()
        Overrides:
        init in class java.applet.Applet
      • showTextFrame

        public void showTextFrame​(java.lang.String s,
                                  java.lang.String title)
      • start

        public void start()
        Overrides:
        start in class java.applet.Applet