Class BlastHspBuilder


  • public class BlastHspBuilder
    extends java.lang.Object
    Designed by Paolo Pavan. You may want to find my contacts on Github and LinkedIn for code info or discuss major changes. https://github.com/paolopavan
    Author:
    Paolo Pavan
    • Constructor Detail

      • BlastHspBuilder

        public BlastHspBuilder()
    • Method Detail

      • setHspBitScore

        public BlastHspBuilder setHspBitScore​(double hspBitScore)
      • setHspQueryFrom

        public BlastHspBuilder setHspQueryFrom​(int hspQueryFrom)
      • setHspQueryFrame

        public BlastHspBuilder setHspQueryFrame​(int hspQueryFrame)
      • setHspHitFrame

        public BlastHspBuilder setHspHitFrame​(int hspHitFrame)
      • setHspIdentity

        public BlastHspBuilder setHspIdentity​(int hspIdentity)
      • setHspPositive

        public BlastHspBuilder setHspPositive​(int hspPositive)
      • setHspAlignLen

        public BlastHspBuilder setHspAlignLen​(int hspAlignLen)
      • setHspQseq

        public BlastHspBuilder setHspQseq​(java.lang.String hspQseq)
      • setHspHseq

        public BlastHspBuilder setHspHseq​(java.lang.String hspHseq)
      • setHspIdentityString

        public BlastHspBuilder setHspIdentityString​(java.lang.String hspIdentityString)
      • setPercentageIdentity

        public BlastHspBuilder setPercentageIdentity​(java.lang.Double percentageIdentity)
      • setMismatchCount

        public BlastHspBuilder setMismatchCount​(java.lang.Integer mismatchCount)
      • createBlastHsp

        public org.biojava.nbio.core.search.io.blast.BlastHsp createBlastHsp()