Package org.forester.analysis
Class TaxonomyDataManager
- java.lang.Object
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- org.forester.archaeopteryx.tools.RunnableProcess
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- org.forester.analysis.TaxonomyDataManager
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- All Implemented Interfaces:
java.lang.Runnable
public final class TaxonomyDataManager extends RunnableProcess
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Constructor Summary
Constructors Constructor Description TaxonomyDataManager(MainFrameApplication mf, TreePanel treepanel, Phylogeny phy)
TaxonomyDataManager(MainFrameApplication mf, TreePanel treepanel, Phylogeny phy, boolean delete, boolean allow_simple_name)
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Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description static UniProtTaxonomy
obtainUniProtTaxonomy(java.lang.String simple_name, org.forester.analysis.TaxonomyDataManager.QUERY_TYPE qt)
static UniProtTaxonomy
obtainUniProtTaxonomy(Taxonomy tax, java.lang.Object query, org.forester.analysis.TaxonomyDataManager.QUERY_TYPE qt)
void
run()
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Methods inherited from class org.forester.archaeopteryx.tools.RunnableProcess
end, start
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Constructor Detail
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TaxonomyDataManager
public TaxonomyDataManager(MainFrameApplication mf, TreePanel treepanel, Phylogeny phy)
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TaxonomyDataManager
public TaxonomyDataManager(MainFrameApplication mf, TreePanel treepanel, Phylogeny phy, boolean delete, boolean allow_simple_name)
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Method Detail
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obtainUniProtTaxonomy
public static final UniProtTaxonomy obtainUniProtTaxonomy(Taxonomy tax, java.lang.Object query, org.forester.analysis.TaxonomyDataManager.QUERY_TYPE qt) throws java.io.IOException, AncestralTaxonomyInferenceException
- Throws:
java.io.IOException
AncestralTaxonomyInferenceException
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obtainUniProtTaxonomy
public static final UniProtTaxonomy obtainUniProtTaxonomy(java.lang.String simple_name, org.forester.analysis.TaxonomyDataManager.QUERY_TYPE qt) throws java.io.IOException, AncestralTaxonomyInferenceException
- Throws:
java.io.IOException
AncestralTaxonomyInferenceException
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run
public void run()
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