Class GeneChromosomePositionParser


  • public class GeneChromosomePositionParser
    extends java.lang.Object
    A parser that parses a file from the UCSC genome browser that contains mapping of gene name to chromosome positions
    Author:
    Andreas Prlic
    • Field Detail

      • DEFAULT_MAPPING_URL

        public static final java.lang.String DEFAULT_MAPPING_URL
        See Also:
        Constant Field Values
    • Constructor Detail

      • GeneChromosomePositionParser

        public GeneChromosomePositionParser()
    • Method Detail

      • main

        public static void main​(java.lang.String[] args)
      • getChromosomeMappings

        public static java.util.List<GeneChromosomePosition> getChromosomeMappings()
                                                                            throws java.io.IOException
        Throws:
        java.io.IOException
      • getChromosomeMappings

        public static java.util.List<GeneChromosomePosition> getChromosomeMappings​(java.io.InputStream inStream)
                                                                            throws java.io.IOException
        Throws:
        java.io.IOException