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Index

A | B | C | D | E | F | G | H | I | J | L | M | N | O | P | Q | R | S | T | U | V | W

A

abc() (in module dipy.boots.resampling)
add() (in module dipy.viz.fvtk)
Affine matrix
Affine transformation
annotatePick() (in module dipy.viz.fvtk)
approx_polygon_track() (in module dipy.tracking.distances)
approximate_mdl_trajectory() (in module dipy.tracking.distances)
arbitrarypoint() (in module dipy.tracking.metrics)
argmax_from_adj() (in module dipy.core.meshes)
axes() (in module dipy.viz.fvtk)
Axis angle

B

bootstrap() (in module dipy.boots.resampling)
bs_se() (in module dipy.boots.resampling)
bundles_distances_mam() (in module dipy.tracking.distances)
bytes() (in module dipy.tracking.metrics)

C

cart2sphere() (in module dipy.core.geometry)
cart_distance() (in module dipy.core.geometry)
cartesian2polar() (in module dipy.reconst.qball)
center_of_mass() (in module dipy.tracking.metrics)
circumradius() (in module dipy.core.geometry)
clear() (in module dipy.viz.fvtk)
colors() (in module dipy.viz.fvtk)
compose_matrix() (in module dipy.core.geometry)
contour() (in module dipy.viz.fvtk)
copy() (dipy.reconst.maskedview.MaskedView method)
create_half_unit_sphere() (in module dipy.core.triangle_subdivide)
create_unit_sphere() (in module dipy.core.triangle_subdivide)
crossing() (in module dipy.viz.fvtk)
cut_plane() (in module dipy.tracking.distances)

D

D (dipy.reconst.dti.Tensor attribute)
decompose_matrix() (in module dipy.core.geometry)
decompose_tensor() (in module dipy.reconst.dti)
design_matrix() (in module dipy.reconst.dti)
detect_corresponding_tracks() (in module dipy.tracking.learning)
detect_corresponding_tracks_plus() (in module dipy.tracking.learning)
dipy.align.aniso2iso (module)
dipy.boots.resampling (module)
dipy.core (module)
dipy.core.geometry (module)
dipy.core.graph (module)
dipy.core.meshes (module)
dipy.core.onetime (module)
dipy.core.profile (module)
dipy.core.rng (module)
dipy.core.sphere_stats (module)
dipy.core.triangle_subdivide (module)
dipy.data (module)
dipy.external (module)
dipy.external.fsl (module)
dipy.io.bvectxt (module)
dipy.io.dpy (module)
dipy.io.pickles (module)
dipy.reconst.dandelion (module)
dipy.reconst.dti (module)
dipy.reconst.gqi (module)
dipy.reconst.maskedview (module)
dipy.reconst.modelarray (module)
dipy.reconst.qball (module)
dipy.tracking.distances (module)
dipy.tracking.learning (module)
dipy.tracking.metrics (module)
dipy.tracking.propagation (module)
dipy.tracking.propspeed (module)
dipy.tracking.vox2track (module)
dipy.viz.fvtk (module)
divide_all() (in module dipy.core.triangle_subdivide)
dots() (in module dipy.viz.fvtk)
downsample() (in module dipy.tracking.metrics)

E

edges() (in module dipy.core.meshes)
eigenstats() (in module dipy.core.sphere_stats)
endpoint() (in module dipy.tracking.metrics)
equatorial_zone_vertices() (in module dipy.reconst.gqi)
Euclidean norm
EuDX (class in dipy.tracking.propagation)
eudx_both_directions() (in module dipy.tracking.propspeed)
Euler angles
euler_characteristic_check() (in module dipy.core.meshes)
euler_matrix() (in module dipy.core.geometry)
evals (dipy.reconst.dti.Tensor attribute)
evecs (dipy.reconst.dti.Tensor attribute)

F

fa() (dipy.reconst.dti.Tensor method)
filled() (dipy.reconst.maskedview.MaskedView method)
flirt2aff() (in module dipy.external.fsl)
flirt2aff_files() (in module dipy.external.fsl)
frenet_serret() (in module dipy.tracking.metrics)
FSLError

G

GeneralizedQSampling (class in dipy.reconst.gqi)
generate_combinations() (in module dipy.tracking.metrics)
get_data() (in module dipy.data)
get_sim_voxels() (in module dipy.data)
get_size() (dipy.reconst.maskedview.MaskedView method)
get_skeleton() (in module dipy.data)
get_sphere() (in module dipy.data)
Gimbal lock
Graph (class in dipy.core.graph)

H

have_flirt() (in module dipy.external.fsl)
Homogenous coordinates

I

ind() (dipy.reconst.dti.Tensor method)
(dipy.reconst.gqi.GeneralizedQSampling method)
inside_sphere() (in module dipy.tracking.metrics)
inside_sphere_points() (in module dipy.tracking.metrics)
intersect_segment_cylinder() (in module dipy.tracking.distances)
intersect_sphere() (in module dipy.tracking.metrics)

J

jackknife() (in module dipy.boots.resampling)

L

label() (in module dipy.viz.fvtk)
lambert_equal_area_projection_cart() (in module dipy.core.geometry)
lambert_equal_area_projection_polar() (in module dipy.core.geometry)
larch_3merge() (in module dipy.tracking.distances)
larch_3split() (in module dipy.tracking.distances)
LEcuyer() (in module dipy.core.rng)
lee_angle_distance() (in module dipy.tracking.distances)
lee_perpendicular_distance() (in module dipy.tracking.distances)
length() (in module dipy.tracking.metrics)
line() (in module dipy.viz.fvtk)
Linear transformation
load_pickle() (in module dipy.io.pickles)
local_skeleton_clustering() (in module dipy.tracking.distances)
local_skeleton_clustering_3pts() (in module dipy.tracking.distances)
longest_track_bundle() (in module dipy.tracking.metrics)

M

magn() (in module dipy.tracking.metrics)
mam_distances() (in module dipy.tracking.distances)
mask (dipy.reconst.modelarray.ModelArray attribute)
MaskedView (class in dipy.reconst.maskedview)
md() (dipy.reconst.dti.Tensor method)
mean_curvature() (in module dipy.tracking.metrics)
mean_orientation() (in module dipy.tracking.metrics)
midpoint() (in module dipy.tracking.metrics)
midpoint2point() (in module dipy.tracking.metrics)
minimum_closest_distance() (in module dipy.tracking.distances)
model_params (dipy.reconst.modelarray.ModelArray attribute)
ModelArray (class in dipy.reconst.modelarray)
most_similar_track_mam() (in module dipy.tracking.distances)

N

ndarray_offset() (in module dipy.tracking.propspeed)
ndim (dipy.reconst.modelarray.ModelArray attribute)
nearest_pos_semi_def() (in module dipy.core.geometry)
neighbors() (in module dipy.core.meshes)
norm_3vec() (in module dipy.tracking.distances)
normalize_v3() (in module dipy.core.triangle_subdivide)
normalized_3vec() (in module dipy.tracking.distances)
normalized_vector() (in module dipy.core.geometry)
npa() (dipy.reconst.gqi.GeneralizedQSampling method)

O

odf() (dipy.reconst.gqi.GeneralizedQSampling method)
ols_fit_tensor() (in module dipy.reconst.dti)
OneTimeProperty (in module dipy.core.onetime)

P

patch_vertices() (in module dipy.reconst.gqi)
peak_finding_compatible() (in module dipy.core.meshes)
pipe() (in module dipy.external.fsl)
point_segment_sq_distance() (in module dipy.tracking.distances)
point_track_sq_distance_check() (in module dipy.tracking.distances)
polar_zone_vertices() (in module dipy.reconst.gqi)
principal_components() (in module dipy.tracking.metrics)
print_stats() (dipy.core.profile.Profiler method)
Profiler (class in dipy.core.profile)

Q

qa() (dipy.reconst.gqi.GeneralizedQSampling method)
quantize_evecs() (in module dipy.reconst.dti)
Quaternion

R

read_bvec_file() (in module dipy.io.bvectxt)
real_sph_harm() (in module dipy.reconst.qball)
record() (in module dipy.viz.fvtk)
Reflection
remove_half_sphere() (in module dipy.core.triangle_subdivide)
ren() (in module dipy.viz.fvtk)
resample() (in module dipy.align.aniso2iso)
rm() (in module dipy.viz.fvtk)
rm_all() (in module dipy.viz.fvtk)
Rotation matrix
Rotation vector
run_flirt_imgs() (in module dipy.external.fsl)

S

save_pickle() (in module dipy.io.pickles)
setattr_on_read() (in module dipy.core.onetime)
shape (dipy.reconst.modelarray.ModelArray attribute)
Shear matrix
show() (in module dipy.viz.fvtk)
slicer() (in module dipy.viz.fvtk)
sph_harm_ind_list() (in module dipy.reconst.qball)
sphere() (in module dipy.viz.fvtk)
sphere2cart() (in module dipy.core.geometry)
sphere_distance() (in module dipy.core.geometry)
SphericalDandelion (class in dipy.reconst.dandelion)
spline() (in module dipy.tracking.metrics)
startpoint() (in module dipy.tracking.metrics)
sym_hemisphere() (in module dipy.core.meshes)

T

Tensor (class in dipy.reconst.dti)
track_counts() (in module dipy.tracking.vox2track)
track_dist_3pts() (in module dipy.tracking.distances)
track_roi_intersection_check() (in module dipy.tracking.distances)
tube() (in module dipy.viz.fvtk)

U

Unit vector
upper_hemi_map() (in module dipy.reconst.gqi)

V

vector_cosine() (in module dipy.core.geometry)
vector_norm() (in module dipy.core.geometry)
vertex_adjacencies() (in module dipy.core.meshes)
vertinds_faces() (in module dipy.core.meshes)
vertinds_to_neighbors() (in module dipy.core.meshes)
volume() (in module dipy.viz.fvtk)

W

warp_displacements() (in module dipy.external.fsl)
warp_displacements_tracks() (in module dipy.external.fsl)
WichmannHill1982() (in module dipy.core.rng)
WichmannHill2006() (in module dipy.core.rng)
wls_fit_tensor() (in module dipy.reconst.dti)
write_bvals_bvecs() (in module dipy.external.fsl)